require(ggplot2)
### Demonstrate dendro_data.dendrogram
model <- hclust(dist(USArrests), "ave")
dendro <- as.dendrogram(model)
# Rectangular lines
ddata <- dendro_data(dendro, type="rectangle")
ggplot(segment(ddata)) +
geom_segment(aes(x=x, y=y, xend=xend, yend=yend)) +
coord_flip() +
scale_y_reverse(expand=c(0.2, 0)) +
theme_dendro()
# Triangular lines
ddata <- dendro_data(dendro, type="triangle")
ggplot(segment(ddata)) +
geom_segment(aes(x=x, y=y, xend=xend, yend=yend)) +
theme_dendro()
# Demonstrate dendro_data.hclust
require(ggplot2)
hc <- hclust(dist(USArrests), "ave")
# Rectangular lines
hcdata <- dendro_data(hc, type="rectangle")
ggplot(segment(hcdata)) +
geom_segment(aes(x=x, y=y, xend=xend, yend=yend)) +
coord_flip() +
scale_y_reverse(expand=c(0.2, 0)) +
theme_dendro()
# Triangular lines
hcdata <- dendro_data(hc, type="triangle")
ggplot(segment(hcdata)) +
geom_segment(aes(x=x, y=y, xend=xend, yend=yend)) +
theme_dendro()
### Demonstrate the twins of agnes and diana, from package cluster
if(require(cluster)){
model <- agnes(votes.repub, metric = "manhattan", stand = TRUE)
dg <- as.dendrogram(model)
ggdendrogram(dg)
}
## Loading required package: cluster
if(require(cluster)){
model <- diana(votes.repub, metric = "manhattan", stand = TRUE)
dg <- as.dendrogram(model)
ggdendrogram(dg)
}